IL_4V5B_287

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGAC*GUACA

Length

9 nucleotides

Bulged bases

4V5B|1|DA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_287 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3558

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V5B|1|DA|U|921
4V5B|1|DA|G|922
4V5B|1|DA|A|923
4V5B|1|DA|C|924
*
4V5B|1|DA|G|1392
4V5B|1|DA|U|1393
4V5B|1|DA|A|1394
4V5B|1|DA|C|1395
4V5B|1|DA|A|1396

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DE

30S RIBOSOMAL PROTEIN S5