Loop IL_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: GUGGUUUAAUUCGAUGCAACGCGAAGAACCUUAC*GGCUACACAC
Length: 44 nucleotides
Bulged bases: 4V5B|1|DA|G|971, 4V5B|1|DA|A|975, 4V5B|1|DA|G|976, 4V5B|1|DA|A|978
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|DA|G|951
4V5B|1|DA|U|952
4V5B|1|DA|G|953
4V5B|1|DA|G|954
4V5B|1|DA|U|955
4V5B|1|DA|U|956
4V5B|1|DA|U|957
4V5B|1|DA|A|958
4V5B|1|DA|A|959
4V5B|1|DA|U|960
4V5B|1|DA|U|961
4V5B|1|DA|C|962
4V5B|1|DA|G|963
4V5B|1|DA|A|964
4V5B|1|DA|U|965
4V5B|1|DA|G|966
4V5B|1|DA|C|967
4V5B|1|DA|A|968
4V5B|1|DA|A|969
4V5B|1|DA|C|970
4V5B|1|DA|G|971
4V5B|1|DA|C|972
4V5B|1|DA|G|973
4V5B|1|DA|A|974
4V5B|1|DA|A|975
4V5B|1|DA|G|976
4V5B|1|DA|A|977
4V5B|1|DA|A|978
4V5B|1|DA|C|979
4V5B|1|DA|C|980
4V5B|1|DA|U|981
4V5B|1|DA|U|982
4V5B|1|DA|A|983
4V5B|1|DA|C|984
*
4V5B|1|DA|G|1221
4V5B|1|DA|G|1222
4V5B|1|DA|C|1223
4V5B|1|DA|U|1224
4V5B|1|DA|A|1225
4V5B|1|DA|C|1226
4V5B|1|DA|A|1227
4V5B|1|DA|C|1228
4V5B|1|DA|A|1229
4V5B|1|DA|C|1230

Current chains

Chain DA: 16S RIBOSOMAL RNA

Nearby chains

Chain DI: 30S RIBOSOMAL PROTEIN S9
Chain DJ: 30S RIBOSOMAL PROTEIN S10
Chain DM: 30S RIBOSOMAL PROTEIN S13
Chain DN: 30S RIBOSOMAL PROTEIN S14
Chain DS: 30S RIBOSOMAL PROTEIN S19

IL_4V5B_290