IL_4V5B_296
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GCUG*CAAGU
- Length
- 9 nucleotides
- Bulged bases
- 4V5B|1|DA|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5B_296 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.3051
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V5B|1|DA|G|1058
4V5B|1|DA|C|1059
4V5B|1|DA|U|1060
4V5B|1|DA|G|1061
*
4V5B|1|DA|C|1195
4V5B|1|DA|A|1196
4V5B|1|DA|A|1197
4V5B|1|DA|G|1198
4V5B|1|DA|U|1199
Current chains
- Chain DA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain DC
- 30S RIBOSOMAL PROTEIN S3
- Chain DE
- 30S RIBOSOMAL PROTEIN S5
- Chain DJ
- 30S RIBOSOMAL PROTEIN S10
- Chain DN
- 30S RIBOSOMAL PROTEIN S14
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