IL_4V5B_300

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGCC*GGAGGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|1158
4V5B|1|DA|U|1159
4V5B|1|DA|G|1160
4V5B|1|DA|C|1161
4V5B|1|DA|C|1162
*
4V5B|1|DA|G|1174
4V5B|1|DA|G|1175
4V5B|1|DA|A|1176
4V5B|1|DA|G|1177
4V5B|1|DA|G|1178
4V5B|1|DA|A|1179
4V5B|1|DA|A|1180
4V5B|1|DA|G|1181

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DB

30S RIBOSOMAL PROTEIN S2

Chain DG

30S RIBOSOMAL PROTEIN S7

Chain DI

30S RIBOSOMAL PROTEIN S9