IL_4V5B_312

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGA*UCCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_312 not in the Motif Atlas

Homologous match to IL_4WF9_003

Geometric discrepancy: 0.2416

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V5B|1|AB|A|42
4V5B|1|AB|G|43
4V5B|1|AB|A|44
*
4V5B|1|AB|U|434
4V5B|1|AB|C|435
4V5B|1|AB|C|436
4V5B|1|AB|U|437

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains