IL_4V5B_314

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V5B|1|AB|A|504, 4V5B|1|AB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_314 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.2119

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V5B|1|AB|G|481
4V5B|1|AB|A|482
4V5B|1|AB|A|483
4V5B|1|AB|C|484
*
4V5B|1|AB|G|496
4V5B|1|AB|A|497
4V5B|1|AB|G|498
4V5B|1|AB|U|499
4V5B|1|AB|G|500
4V5B|1|AB|A|501
4V5B|1|AB|A|502
4V5B|1|AB|A|503
4V5B|1|AB|A|504
4V5B|1|AB|A|505
4V5B|1|AB|G|506
4V5B|1|AB|A|507
4V5B|1|AB|A|508
4V5B|1|AB|C|509

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AS

50S RIBOSOMAL PROTEIN L22

Chain AU

50S RIBOSOMAL PROTEIN L24