IL_4V5B_315

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GACU*AGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_315 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.2891

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4V5B|1|AB|G|738
4V5B|1|AB|A|739
4V5B|1|AB|C|740
4V5B|1|AB|U|741
*
4V5B|1|AB|A|756
4V5B|1|AB|G|757
4V5B|1|AB|C|758

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L34