IL_4V5B_316

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UCCGGGGGUAG*CGAAUACCGGA

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|U|852
4V5B|1|AB|C|853
4V5B|1|AB|C|854
4V5B|1|AB|G|855
4V5B|1|AB|G|856
4V5B|1|AB|G|857
4V5B|1|AB|G|858
4V5B|1|AB|G|859
4V5B|1|AB|U|860
4V5B|1|AB|A|861
4V5B|1|AB|G|862
*
4V5B|1|AB|C|915
4V5B|1|AB|G|916
4V5B|1|AB|A|917
4V5B|1|AB|A|918
4V5B|1|AB|U|919
4V5B|1|AB|A|920
4V5B|1|AB|C|921
4V5B|1|AB|C|922
4V5B|1|AB|G|923
4V5B|1|AB|G|924
4V5B|1|AB|A|925

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AM

50S RIBOSOMAL PROTEIN L16

Chain AW

50S RIBOSOMAL PROTEIN L27

Chain AY

50S RIBOSOMAL PROTEIN L30