IL_4V5B_317

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAGCACUG*CAAACUGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|G|862
4V5B|1|AB|A|863
4V5B|1|AB|G|864
4V5B|1|AB|C|865
4V5B|1|AB|A|866
4V5B|1|AB|C|867
4V5B|1|AB|U|868
4V5B|1|AB|G|869
*
4V5B|1|AB|C|908
4V5B|1|AB|A|909
4V5B|1|AB|A|910
4V5B|1|AB|A|911
4V5B|1|AB|C|912
4V5B|1|AB|U|913
4V5B|1|AB|G|914
4V5B|1|AB|C|915

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AM

50S RIBOSOMAL PROTEIN L16

Chain AW

50S RIBOSOMAL PROTEIN L27