IL_4V5B_319

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCCCAGACAGCC*GGUCGAGU

Length

20 nucleotides

Bulged bases

4V5B|1|AB|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|G|1042
4V5B|1|AB|C|1043
4V5B|1|AB|C|1044
4V5B|1|AB|C|1045
4V5B|1|AB|A|1046
4V5B|1|AB|G|1047
4V5B|1|AB|A|1048
4V5B|1|AB|C|1049
4V5B|1|AB|A|1050
4V5B|1|AB|G|1051
4V5B|1|AB|C|1052
4V5B|1|AB|C|1053
*
4V5B|1|AB|G|1106
4V5B|1|AB|G|1107
4V5B|1|AB|U|1108
4V5B|1|AB|C|1109
4V5B|1|AB|G|1110
4V5B|1|AB|A|1111
4V5B|1|AB|G|1112
4V5B|1|AB|U|1113

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AG

50S RIBOSOMAL PROTEIN L6