IL_4V5B_320

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGGA*UUUAAAGAAAGCGUAAUAGCUCACU

Length

29 nucleotides

Bulged bases

4V5B|1|AB|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|A|1054
4V5B|1|AB|G|1055
4V5B|1|AB|G|1056
4V5B|1|AB|A|1057
*
4V5B|1|AB|U|1081
4V5B|1|AB|U|1082
4V5B|1|AB|U|1083
4V5B|1|AB|A|1084
4V5B|1|AB|A|1085
4V5B|1|AB|A|1086
4V5B|1|AB|G|1087
4V5B|1|AB|A|1088
4V5B|1|AB|A|1089
4V5B|1|AB|A|1090
4V5B|1|AB|G|1091
4V5B|1|AB|C|1092
4V5B|1|AB|G|1093
4V5B|1|AB|U|1094
4V5B|1|AB|A|1095
4V5B|1|AB|A|1096
4V5B|1|AB|U|1097
4V5B|1|AB|A|1098
4V5B|1|AB|G|1099
4V5B|1|AB|C|1100
4V5B|1|AB|U|1101
4V5B|1|AB|C|1102
4V5B|1|AB|A|1103
4V5B|1|AB|C|1104
4V5B|1|AB|U|1105

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A4

50S RIBOSOMAL PROTEIN L36

Chain AG

50S RIBOSOMAL PROTEIN L6

Chain AI

50S RIBOSOMAL PROTEIN L11