IL_4V5B_333

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGG*UACU

Length

7 nucleotides

Bulged bases

4V5B|1|AB|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_333 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.3781

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V5B|1|AB|A|2837
4V5B|1|AB|G|2838
4V5B|1|AB|G|2839
*
4V5B|1|AB|U|2878
4V5B|1|AB|A|2879
4V5B|1|AB|C|2880
4V5B|1|AB|U|2881

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AN

50S RIBOSOMAL PROTEIN L17

Chain AP

50S RIBOSOMAL PROTEIN L19