IL_4V5B_340

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGUAGAGGGG*CCCUGGACG

Length

19 nucleotides

Bulged bases

4V5B|1|BA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|BA|C|660
4V5B|1|BA|G|661
4V5B|1|BA|U|662
4V5B|1|BA|A|663
4V5B|1|BA|G|664
4V5B|1|BA|A|665
4V5B|1|BA|G|666
4V5B|1|BA|G|667
4V5B|1|BA|G|668
4V5B|1|BA|G|669
*
4V5B|1|BA|C|737
4V5B|1|BA|C|738
4V5B|1|BA|C|739
4V5B|1|BA|U|740
4V5B|1|BA|G|741
4V5B|1|BA|G|742
4V5B|1|BA|A|743
4V5B|1|BA|C|744
4V5B|1|BA|G|745

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BF

30S RIBOSOMAL PROTEIN S6

Chain BO

30S RIBOSOMAL PROTEIN S15

Chain BR

30S RIBOSOMAL PROTEIN S18

Chain BU

30S RIBOSOMAL PROTEIN S21