IL_4V5B_358

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGGGAAGG*UCGGCCUGC

Length

18 nucleotides

Bulged bases

4V5B|1|CB|U|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|1034
4V5B|1|CB|U|1035
4V5B|1|CB|G|1036
4V5B|1|CB|G|1037
4V5B|1|CB|G|1038
4V5B|1|CB|A|1039
4V5B|1|CB|A|1040
4V5B|1|CB|G|1041
4V5B|1|CB|G|1042
*
4V5B|1|CB|U|1113
4V5B|1|CB|C|1114
4V5B|1|CB|G|1115
4V5B|1|CB|G|1116
4V5B|1|CB|C|1117
4V5B|1|CB|C|1118
4V5B|1|CB|U|1119
4V5B|1|CB|G|1120
4V5B|1|CB|C|1121

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C4

50S RIBOSOMAL PROTEIN L36

Chain CG

50S RIBOSOMAL PROTEIN L6

Chain CM

50S RIBOSOMAL PROTEIN L16

Chain CV

50S RIBOSOMAL PROTEIN L25