Loop IL_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCACUGGUCGAG
Length: 60 nucleotides
Bulged bases: 4V5B|1|CB|C|1045, 4V5B|1|CB|A|1046
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|CB|C|1043
4V5B|1|CB|C|1044
4V5B|1|CB|C|1045
4V5B|1|CB|A|1046
4V5B|1|CB|G|1047
4V5B|1|CB|A|1048
4V5B|1|CB|C|1049
4V5B|1|CB|A|1050
4V5B|1|CB|G|1051
4V5B|1|CB|C|1052
4V5B|1|CB|C|1053
4V5B|1|CB|A|1054
4V5B|1|CB|G|1055
4V5B|1|CB|G|1056
4V5B|1|CB|A|1057
4V5B|1|CB|U|1058
4V5B|1|CB|G|1059
4V5B|1|CB|U|1060
4V5B|1|CB|U|1061
4V5B|1|CB|G|1062
4V5B|1|CB|G|1063
4V5B|1|CB|C|1064
4V5B|1|CB|U|1065
4V5B|1|CB|U|1066
4V5B|1|CB|A|1067
4V5B|1|CB|G|1068
4V5B|1|CB|A|1069
4V5B|1|CB|A|1070
4V5B|1|CB|G|1071
4V5B|1|CB|C|1072
4V5B|1|CB|A|1073
4V5B|1|CB|G|1074
4V5B|1|CB|C|1075
4V5B|1|CB|C|1076
4V5B|1|CB|A|1077
4V5B|1|CB|U|1078
4V5B|1|CB|C|1079
4V5B|1|CB|A|1080
4V5B|1|CB|U|1081
4V5B|1|CB|U|1082
4V5B|1|CB|U|1083
4V5B|1|CB|A|1084
4V5B|1|CB|A|1085
4V5B|1|CB|A|1086
4V5B|1|CB|G|1087
4V5B|1|CB|A|1088
4V5B|1|CB|A|1089
4V5B|1|CB|A|1090
*
4V5B|1|CB|U|1101
4V5B|1|CB|C|1102
4V5B|1|CB|A|1103
4V5B|1|CB|C|1104
4V5B|1|CB|U|1105
4V5B|1|CB|G|1106
4V5B|1|CB|G|1107
4V5B|1|CB|U|1108
4V5B|1|CB|C|1109
4V5B|1|CB|G|1110
4V5B|1|CB|A|1111
4V5B|1|CB|G|1112

Current chains

Chain CB: 23S RIBOSOMAL RNA

Nearby chains

Chain C4: 50S RIBOSOMAL PROTEIN L36
Chain CG: 50S RIBOSOMAL PROTEIN L6
Chain CI: 50S RIBOSOMAL PROTEIN L11

IL_4V5B_359