3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCACUGGUCGAG
Length
60 nucleotides
Bulged bases
4V5B|1|CB|C|1045, 4V5B|1|CB|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V5B|1|CB|C|1043
4V5B|1|CB|C|1044
4V5B|1|CB|C|1045
4V5B|1|CB|A|1046
4V5B|1|CB|G|1047
4V5B|1|CB|A|1048
4V5B|1|CB|C|1049
4V5B|1|CB|A|1050
4V5B|1|CB|G|1051
4V5B|1|CB|C|1052
4V5B|1|CB|C|1053
4V5B|1|CB|A|1054
4V5B|1|CB|G|1055
4V5B|1|CB|G|1056
4V5B|1|CB|A|1057
4V5B|1|CB|U|1058
4V5B|1|CB|G|1059
4V5B|1|CB|U|1060
4V5B|1|CB|U|1061
4V5B|1|CB|G|1062
4V5B|1|CB|G|1063
4V5B|1|CB|C|1064
4V5B|1|CB|U|1065
4V5B|1|CB|U|1066
4V5B|1|CB|A|1067
4V5B|1|CB|G|1068
4V5B|1|CB|A|1069
4V5B|1|CB|A|1070
4V5B|1|CB|G|1071
4V5B|1|CB|C|1072
4V5B|1|CB|A|1073
4V5B|1|CB|G|1074
4V5B|1|CB|C|1075
4V5B|1|CB|C|1076
4V5B|1|CB|A|1077
4V5B|1|CB|U|1078
4V5B|1|CB|C|1079
4V5B|1|CB|A|1080
4V5B|1|CB|U|1081
4V5B|1|CB|U|1082
4V5B|1|CB|U|1083
4V5B|1|CB|A|1084
4V5B|1|CB|A|1085
4V5B|1|CB|A|1086
4V5B|1|CB|G|1087
4V5B|1|CB|A|1088
4V5B|1|CB|A|1089
4V5B|1|CB|A|1090
*
4V5B|1|CB|U|1101
4V5B|1|CB|C|1102
4V5B|1|CB|A|1103
4V5B|1|CB|C|1104
4V5B|1|CB|U|1105
4V5B|1|CB|G|1106
4V5B|1|CB|G|1107
4V5B|1|CB|U|1108
4V5B|1|CB|C|1109
4V5B|1|CB|G|1110
4V5B|1|CB|A|1111
4V5B|1|CB|G|1112

Current chains

Chain CB
23S RIBOSOMAL RNA

Nearby chains

Chain C4
50S RIBOSOMAL PROTEIN L36
Chain CG
50S RIBOSOMAL PROTEIN L6
Chain CI
50S RIBOSOMAL PROTEIN L11

Coloring options:

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