IL_4V5B_366

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCGGUG*UAAACG

Length

12 nucleotides

Bulged bases

4V5B|1|CB|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|C|1837
4V5B|1|CB|C|1838
4V5B|1|CB|G|1839
4V5B|1|CB|G|1840
4V5B|1|CB|U|1841
4V5B|1|CB|G|1842
*
4V5B|1|CB|U|1898
4V5B|1|CB|A|1899
4V5B|1|CB|A|1900
4V5B|1|CB|A|1901
4V5B|1|CB|C|1902
4V5B|1|CB|G|1903

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA