IL_4V5B_376

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAGCGGGGAGGAAGG*UUGACGUUACCCGCAGAAG

Length

34 nucleotides

Bulged bases

4V5B|1|DA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|440
4V5B|1|DA|A|441
4V5B|1|DA|G|442
4V5B|1|DA|C|443
4V5B|1|DA|G|444
4V5B|1|DA|G|445
4V5B|1|DA|G|446
4V5B|1|DA|G|447
4V5B|1|DA|A|448
4V5B|1|DA|G|449
4V5B|1|DA|G|450
4V5B|1|DA|A|451
4V5B|1|DA|A|452
4V5B|1|DA|G|453
4V5B|1|DA|G|454
*
4V5B|1|DA|U|479
4V5B|1|DA|U|480
4V5B|1|DA|G|481
4V5B|1|DA|A|482
4V5B|1|DA|C|483
4V5B|1|DA|G|484
4V5B|1|DA|U|485
4V5B|1|DA|U|486
4V5B|1|DA|A|487
4V5B|1|DA|C|488
4V5B|1|DA|C|489
4V5B|1|DA|C|490
4V5B|1|DA|G|491
4V5B|1|DA|C|492
4V5B|1|DA|A|493
4V5B|1|DA|G|494
4V5B|1|DA|A|495
4V5B|1|DA|A|496
4V5B|1|DA|G|497

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AH

50S RIBOSOMAL PROTEIN L9

Chain DD

30S RIBOSOMAL PROTEIN S4

Chain DP

30S RIBOSOMAL PROTEIN S16