IL_4V5B_378

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGCCAGC*GCGGUAAUAC

Length

18 nucleotides

Bulged bases

4V5B|1|DA|G|530, 4V5B|1|DA|A|532, 4V5B|1|DA|U|534, 4V5B|1|DA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|515
4V5B|1|DA|U|516
4V5B|1|DA|G|517
4V5B|1|DA|C|518
4V5B|1|DA|C|519
4V5B|1|DA|A|520
4V5B|1|DA|G|521
4V5B|1|DA|C|522
*
4V5B|1|DA|G|527
4V5B|1|DA|C|528
4V5B|1|DA|G|529
4V5B|1|DA|G|530
4V5B|1|DA|U|531
4V5B|1|DA|A|532
4V5B|1|DA|A|533
4V5B|1|DA|U|534
4V5B|1|DA|A|535
4V5B|1|DA|C|536

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain DC

30S RIBOSOMAL PROTEIN S3

Chain DD

30S RIBOSOMAL PROTEIN S4

Chain DL

30S RIBOSOMAL PROTEIN S12