IL_4V5B_388

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUUUGUUGCC*GGAACUCAAAG

Length

21 nucleotides

Bulged bases

4V5B|1|DA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|1120
4V5B|1|DA|U|1121
4V5B|1|DA|U|1122
4V5B|1|DA|U|1123
4V5B|1|DA|G|1124
4V5B|1|DA|U|1125
4V5B|1|DA|U|1126
4V5B|1|DA|G|1127
4V5B|1|DA|C|1128
4V5B|1|DA|C|1129
*
4V5B|1|DA|G|1143
4V5B|1|DA|G|1144
4V5B|1|DA|A|1145
4V5B|1|DA|A|1146
4V5B|1|DA|C|1147
4V5B|1|DA|U|1148
4V5B|1|DA|C|1149
4V5B|1|DA|A|1150
4V5B|1|DA|A|1151
4V5B|1|DA|A|1152
4V5B|1|DA|G|1153

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DI

30S RIBOSOMAL PROTEIN S9

Chain DJ

30S RIBOSOMAL PROTEIN S10