IL_4V5B_392

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAAAAGAAG*CCACUUUG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|1427
4V5B|1|DA|A|1428
4V5B|1|DA|A|1429
4V5B|1|DA|A|1430
4V5B|1|DA|A|1431
4V5B|1|DA|G|1432
4V5B|1|DA|A|1433
4V5B|1|DA|A|1434
4V5B|1|DA|G|1435
*
4V5B|1|DA|C|1466
4V5B|1|DA|C|1467
4V5B|1|DA|A|1468
4V5B|1|DA|C|1469
4V5B|1|DA|U|1470
4V5B|1|DA|U|1471
4V5B|1|DA|U|1472
4V5B|1|DA|G|1473

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA

Chain CK

50S RIBOSOMAL PROTEIN L14

Chain CP

50S RIBOSOMAL PROTEIN L19

Chain DT

30S RIBOSOMAL PROTEIN S20