IL_4V5B_393

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UAGGUAGCU*GGCGCUUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|U|1436
4V5B|1|DA|A|1437
4V5B|1|DA|G|1438
4V5B|1|DA|G|1439
4V5B|1|DA|U|1440
4V5B|1|DA|A|1441
4V5B|1|DA|G|1442
4V5B|1|DA|C|1443
4V5B|1|DA|U|1444
*
4V5B|1|DA|G|1458
4V5B|1|DA|G|1459
4V5B|1|DA|C|1460
4V5B|1|DA|G|1461
4V5B|1|DA|C|1462
4V5B|1|DA|U|1463
4V5B|1|DA|U|1464
4V5B|1|DA|A|1465

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA

Chain CP

50S RIBOSOMAL PROTEIN L19

Chain DT

30S RIBOSOMAL PROTEIN S20