IL_4V5B_395

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_395 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1658

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V5B|1|AB|G|536
4V5B|1|AB|G|537
4V5B|1|AB|A|538
4V5B|1|AB|G|539
*
4V5B|1|AB|U|554
4V5B|1|AB|G|555
4V5B|1|AB|A|556
4V5B|1|AB|C|557

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AJ

50S RIBOSOMAL PROTEIN L13

Chain AQ

50S RIBOSOMAL PROTEIN L20