IL_4V5B_450

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUUGGAG*UUCCGGAGCUAACGCGUUAAG

Length

28 nucleotides

Bulged bases

4V5B|1|DA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|C|826
4V5B|1|DA|U|827
4V5B|1|DA|U|828
4V5B|1|DA|G|829
4V5B|1|DA|G|830
4V5B|1|DA|A|831
4V5B|1|DA|G|832
*
4V5B|1|DA|U|854
4V5B|1|DA|U|855
4V5B|1|DA|C|856
4V5B|1|DA|C|857
4V5B|1|DA|G|858
4V5B|1|DA|G|859
4V5B|1|DA|A|860
4V5B|1|DA|G|861
4V5B|1|DA|C|862
4V5B|1|DA|U|863
4V5B|1|DA|A|864
4V5B|1|DA|A|865
4V5B|1|DA|C|866
4V5B|1|DA|G|867
4V5B|1|DA|C|868
4V5B|1|DA|G|869
4V5B|1|DA|U|870
4V5B|1|DA|U|871
4V5B|1|DA|A|872
4V5B|1|DA|A|873
4V5B|1|DA|G|874

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DB

30S RIBOSOMAL PROTEIN S2

Chain DE

30S RIBOSOMAL PROTEIN S5

Chain DH

30S RIBOSOMAL PROTEIN S8

Chain DU

30S RIBOSOMAL PROTEIN S21