IL_4V5B_455

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

4V5B|1|DA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_455 not in the Motif Atlas

Homologous match to IL_5J7L_049

Geometric discrepancy: 0.2859

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V5B|1|DA|U|1060
4V5B|1|DA|G|1061
*
4V5B|1|DA|C|1195
4V5B|1|DA|A|1196
4V5B|1|DA|A|1197

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DC

30S RIBOSOMAL PROTEIN S3

Chain DE

30S RIBOSOMAL PROTEIN S5

Chain DJ

30S RIBOSOMAL PROTEIN S10

Chain DN

30S RIBOSOMAL PROTEIN S14