IL_4V5C_003

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V5C|1|AA|C|48, 4V5C|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_003 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.111

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5C|1|AA|C|47
4V5C|1|AA|C|48
4V5C|1|AA|U|49
4V5C|1|AA|A|50
4V5C|1|AA|A|51
4V5C|1|AA|G|52
*
4V5C|1|AA|U|359
4V5C|1|AA|A|360
4V5C|1|AA|G|361

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain DI

50S RIBOSOMAL PROTEIN L9