3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5C_050 not in the Motif Atlas
Geometric match to IL_4LFB_055
Geometric discrepancy: 0.1111
The information below is about IL_4LFB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

4V5C|1|AA|C|1303
4V5C|1|AA|G|1304
4V5C|1|AA|G|1305
4V5C|1|AA|A|1306
4V5C|1|AA|U|1307
4V5C|1|AA|U|1308
*
4V5C|1|AA|A|1329
4V5C|1|AA|U|1330
4V5C|1|AA|G|1331
4V5C|1|AA|A|1332
4V5C|1|AA|A|1333
4V5C|1|AA|G|1334

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AM
30S RIBOSOMAL PROTEIN S13
Chain AU
30S RIBOSOMAL PROTEIN THX

Coloring options:


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