IL_4V5C_071

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V5C|1|BA|U|504, 4V5C|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_071 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0732

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V5C|1|BA|G|481
4V5C|1|BA|A|482
4V5C|1|BA|A|483
4V5C|1|BA|C|484
*
4V5C|1|BA|G|496
4V5C|1|BA|A|497
4V5C|1|BA|G|498
4V5C|1|BA|U|499
4V5C|1|BA|G|500
4V5C|1|BA|A|501
4V5C|1|BA|A|502
4V5C|1|BA|A|503
4V5C|1|BA|U|504
4V5C|1|BA|A|505
4V5C|1|BA|G|506
4V5C|1|BA|A|507
4V5C|1|BA|G|508
4V5C|1|BA|C|509

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L22

Chain BY

50S RIBOSOMAL PROTEIN L24