IL_4V5C_078

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_078 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0568

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V5C|1|BA|U|703
4V5C|1|BA|G|704
4V5C|1|BA|A|705
4V5C|1|BA|A|706
4V5C|1|BA|G|707
*
4V5C|1|BA|U|724
4V5C|1|BA|G|725
4V5C|1|BA|G|726
4V5C|1|BA|A|727
4V5C|1|BA|G|728

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2