IL_4V5C_137

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_137 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2162

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V5C|1|BA|G|2124
4V5C|1|BA|G|2125
4V5C|1|BA|A|2126
4V5C|1|BA|G|2127
*
4V5C|1|BA|C|2161
4V5C|1|BA|G|2162
4V5C|1|BA|C|2163
4V5C|1|BA|C|2164
4V5C|1|BA|G|2165
4V5C|1|BA|G|2166
4V5C|1|BA|U|2167
4V5C|1|BA|G|2168
4V5C|1|BA|A|2169
4V5C|1|BA|A|2170
4V5C|1|BA|A|2171
4V5C|1|BA|U|2172
4V5C|1|BA|A|2173
4V5C|1|BA|C|2174

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1