IL_4V5C_146

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_146 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.1173

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V5C|1|BA|C|2466
4V5C|1|BA|C|2467
4V5C|1|BA|G|2468
4V5C|1|BA|A|2469
4V5C|1|BA|G|2470
*
4V5C|1|BA|C|2480
4V5C|1|BA|G|2481
4V5C|1|BA|G|2482
4V5C|1|BA|C|2483
4V5C|1|BA|G|2484

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BQ

50S RIBOSOMAL PROTEIN L16