IL_4V5C_184

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_184 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1158

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V5C|1|CA|G|450
4V5C|1|CA|A|451
4V5C|1|CA|A|452
4V5C|1|CA|A|453
4V5C|1|CA|C|454
4V5C|1|CA|C|455
*
4V5C|1|CA|G|476
4V5C|1|CA|A|477
4V5C|1|CA|C|479
4V5C|1|CA|U|480
4V5C|1|CA|G|481
4V5C|1|CA|A|482
4V5C|1|CA|C|483

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16