3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
4V5C|1|CA|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5C_187 not in the Motif Atlas
Homologous match to IL_4LFB_022
Geometric discrepancy: 0.0912
The information below is about IL_4LFB_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.6
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
4

Unit IDs

4V5C|1|CA|C|569
4V5C|1|CA|G|570
4V5C|1|CA|U|571
4V5C|1|CA|A|572
4V5C|1|CA|A|573
4V5C|1|CA|A|574
4V5C|1|CA|G|575
*
4V5C|1|CA|C|880
4V5C|1|CA|G|881

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CL
30S RIBOSOMAL PROTEIN S12
Chain CQ
30S RIBOSOMAL PROTEIN S17

Coloring options:


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