IL_4V5C_208

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V5C|1|CA|C|1200, 4V5C|1|CA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_208 not in the Motif Atlas

Geometric match to IL_4LFB_045

Geometric discrepancy: 0.1067

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V5C|1|CA|G|1057
4V5C|1|CA|G|1058
*
4V5C|1|CA|U|1199
4V5C|1|CA|C|1200
4V5C|1|CA|A|1201
4V5C|1|CA|G|1202
4V5C|1|CA|C|1203

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14

Chain CY

Transfer RNA; tRNA