IL_4V5C_212
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_212 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.0936
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5C|1|CA|U|1247
4V5C|1|CA|A|1248
4V5C|1|CA|C|1249
4V5C|1|CA|A|1250
4V5C|1|CA|A|1251
4V5C|1|CA|A|1252
4V5C|1|CA|G|1253
*
4V5C|1|CA|C|1284
4V5C|1|CA|A|1285
4V5C|1|CA|A|1286
4V5C|1|CA|A|1287
4V5C|1|CA|A|1288
4V5C|1|CA|A|1289
4V5C|1|CA|G|1290
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CG
- 30S RIBOSOMAL PROTEIN S7
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CJ
- 30S RIBOSOMAL PROTEIN S10
- Chain CN
- 30S RIBOSOMAL PROTEIN S14
- Chain CU
- 30S RIBOSOMAL PROTEIN THX
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