IL_4V5C_238
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_238 not in the Motif Atlas
- Geometric match to IL_4WF9_017
- Geometric discrepancy: 0.1065
- The information below is about IL_4WF9_017
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V5C|1|DA|C|564
4V5C|1|DA|C|565
4V5C|1|DA|U|566
*
4V5C|1|DA|A|575
4V5C|1|DA|U|576
4V5C|1|DA|G|577
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D5
- 50S RIBOSOMAL PROTEIN L32
- Chain DE
- 50S RIBOSOMAL PROTEIN L3
- Chain DF
- 50S RIBOSOMAL PROTEIN L4
- Chain DP
- 50S RIBOSOMAL PROTEIN L15
- Chain DU
- 50S RIBOSOMAL PROTEIN L20
- Chain DV
- 50S RIBOSOMAL PROTEIN L21
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