IL_4V5C_262
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4V5C|1|DA|U|1026, 4V5C|1|DA|A|1127, 4V5C|1|DA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_262 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0653
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V5C|1|DA|G|1024
4V5C|1|DA|G|1025
4V5C|1|DA|U|1026
4V5C|1|DA|A|1027
4V5C|1|DA|A|1028
4V5C|1|DA|A|1029
4V5C|1|DA|G|1030
*
4V5C|1|DA|C|1124
4V5C|1|DA|G|1125
4V5C|1|DA|A|1126
4V5C|1|DA|A|1127
4V5C|1|DA|A|1128
4V5C|1|DA|A|1129
4V5C|1|DA|U|1130
4V5C|1|DA|G|1131
4V5C|1|DA|A|1132
4V5C|1|DA|U|1133
4V5C|1|DA|C|1135
4V5C|1|DA|G|1136
4V5C|1|DA|G|1137
4V5C|1|DA|G|1138
4V5C|1|DA|G|1139
4V5C|1|DA|C|1140
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D9
- 50S RIBOSOMAL PROTEIN L36
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DE
- 50S RIBOSOMAL PROTEIN L3
- Chain DN
- 50S RIBOSOMAL PROTEIN L13
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
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