3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GUAG*CGC
Length
7 nucleotides
Bulged bases
4V5C|1|DA|A|1490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5C_280 not in the Motif Atlas
Geometric match to IL_5ML7_010
Geometric discrepancy: 0.2579
The information below is about IL_5ML7_010
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

4V5C|1|DA|G|1488
4V5C|1|DA|U|1489
4V5C|1|DA|A|1490
4V5C|1|DA|G|1491
*
4V5C|1|DA|C|1499
4V5C|1|DA|G|1500
4V5C|1|DA|C|1501

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DD
50S RIBOSOMAL PROTEIN L2

Coloring options:


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