3D structure

PDB id
4V5C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
4V5C|1|DA|G|2116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5C_302 not in the Motif Atlas
Homologous match to IL_3U4M_002
Geometric discrepancy: 0.3378
The information below is about IL_3U4M_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_32056.1
Basepair signature
cWW-L-cWW-L-L-tWH-R-L-R-L
Number of instances in this motif group
3

Unit IDs

4V5C|1|DA|G|2110
4V5C|1|DA|C|2111
4V5C|1|DA|G|2112
4V5C|1|DA|U|2113
4V5C|1|DA|A|2114
4V5C|1|DA|G|2115
4V5C|1|DA|G|2116
4V5C|1|DA|A|2117
4V5C|1|DA|U|2118
4V5C|1|DA|A|2119
4V5C|1|DA|G|2120
*
4V5C|1|DA|C|2178
4V5C|1|DA|C|2179

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain CW
Transfer RNA; tRNA
Chain DC
50S RIBOSOMAL PROTEIN L1

Coloring options:


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