IL_4V5C_305

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_305 not in the Motif Atlas

Geometric match to IL_4WF9_086

Geometric discrepancy: 0.3244

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V5C|1|DA|C|2297
4V5C|1|DA|A|2298
4V5C|1|DA|G|2299
*
4V5C|1|DA|C|2317
4V5C|1|DA|G|2318
4V5C|1|DA|G|2319
4V5C|1|DA|A|2320
4V5C|1|DA|G|2321

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S RIBOSOMAL PROTEIN L5

Chain DS

50S RIBOSOMAL PROTEIN L18