IL_4V5C_318
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V5C|1|DA|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_318 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0633
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V5C|1|DA|U|2636
4V5C|1|DA|U|2637
4V5C|1|DA|G|2638
4V5C|1|DA|A|2639
4V5C|1|DA|G|2640
*
4V5C|1|DA|C|2774
4V5C|1|DA|A|2775
4V5C|1|DA|A|2776
4V5C|1|DA|G|2777
4V5C|1|DA|A|2778
4V5C|1|DA|U|2779
4V5C|1|DA|G|2780
4V5C|1|DA|A|2781
4V5C|1|DA|G|2782
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DE
- 50S RIBOSOMAL PROTEIN L3
- Chain DN
- 50S RIBOSOMAL PROTEIN L13
Coloring options: