IL_4V5C_321

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V5C|1|DA|U|2689, 4V5C|1|DA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_321 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1133

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V5C|1|DA|U|2687
4V5C|1|DA|U|2688
4V5C|1|DA|U|2689
4V5C|1|DA|C|2690
4V5C|1|DA|C|2691
*
4V5C|1|DA|G|2718
4V5C|1|DA|G|2719
4V5C|1|DA|U|2720
4V5C|1|DA|A|2721
4V5C|1|DA|G|2722

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DR

50S RIBOSOMAL PROTEIN L17

Chain DT

50S RIBOSOMAL PROTEIN L19