IL_4V5C_348
3D structure
- PDB id
- 4V5C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5C_348 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.0759
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V5C|1|CA|G|673
4V5C|1|CA|G|674
4V5C|1|CA|A|675
4V5C|1|CA|A|676
4V5C|1|CA|U|677
*
4V5C|1|CA|G|713
4V5C|1|CA|G|714
4V5C|1|CA|A|715
4V5C|1|CA|A|716
4V5C|1|CA|C|717
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CF
- 30S RIBOSOMAL PROTEIN S6
- Chain CK
- 30S RIBOSOMAL PROTEIN S11
- Chain CR
- 30S RIBOSOMAL PROTEIN S18
- Chain DD
- 50S RIBOSOMAL PROTEIN L2
Coloring options: