IL_4V5C_372

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V5C|1|CA|A|1256, 4V5C|1|CA|U|1257, 4V5C|1|CA|U|1278, 4V5C|1|CA|A|1280, 4V5C|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5C_372 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.4325

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5C|1|CA|G|1255
4V5C|1|CA|A|1256
4V5C|1|CA|U|1257
4V5C|1|CA|G|1258
*
4V5C|1|CA|C|1277
4V5C|1|CA|U|1278
4V5C|1|CA|A|1279
4V5C|1|CA|A|1280
4V5C|1|CA|U|1281
4V5C|1|CA|C|1282

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14