IL_4V5D_027

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_027 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.0688

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V5D|1|AA|G|654
4V5D|1|AA|A|655
*
4V5D|1|AA|U|751
4V5D|1|AA|G|752
4V5D|1|AA|A|753
4V5D|1|AA|C|754

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AO

30S RIBOSOMAL PROTEIN S15