IL_4V5D_052

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_052 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1225

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V5D|1|AA|G|1401
4V5D|1|AA|C|1402
4V5D|1|AA|C|1403
4V5D|1|AA|C|1404
*
4V5D|1|AA|G|1497
4V5D|1|AA|U|1498
4V5D|1|AA|A|1499
4V5D|1|AA|A|1500
4V5D|1|AA|C|1501

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

MRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA