IL_4V5D_058

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_058 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2391

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5D|1|AA|G|1435
4V5D|1|AA|U|1436
4V5D|1|AA|C|1437
4V5D|1|AA|G|1438
*
4V5D|1|AA|C|1463
4V5D|1|AA|G|1464
4V5D|1|AA|C|1465
4V5D|1|AA|C|1466

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S RIBOSOMAL PROTEIN L19