IL_4V5D_153

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V5D|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_153 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0761

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V5D|1|BA|U|2636
4V5D|1|BA|U|2637
4V5D|1|BA|G|2638
4V5D|1|BA|A|2639
4V5D|1|BA|G|2640
*
4V5D|1|BA|C|2774
4V5D|1|BA|A|2775
4V5D|1|BA|A|2776
4V5D|1|BA|G|2777
4V5D|1|BA|A|2778
4V5D|1|BA|U|2779
4V5D|1|BA|G|2780
4V5D|1|BA|A|2781
4V5D|1|BA|G|2782

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BN

50S RIBOSOMAL PROTEIN L13