IL_4V5D_192

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_192 not in the Motif Atlas

Homologous match to IL_4LFB_026

Geometric discrepancy: 0.148

The information below is about IL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V5D|1|CA|U|605
4V5D|1|CA|G|606
4V5D|1|CA|A|607
4V5D|1|CA|A|608
4V5D|1|CA|A|609
4V5D|1|CA|G|610
4V5D|1|CA|A|611
4V5D|1|CA|C|612
*
4V5D|1|CA|G|628
4V5D|1|CA|G|629
4V5D|1|CA|G|630
4V5D|1|CA|G|631
4V5D|1|CA|A|632
4V5D|1|CA|G|633

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CH

30S RIBOSOMAL PROTEIN S8

Chain CP

30S RIBOSOMAL PROTEIN S16