IL_4V5D_197

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V5D|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_197 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1366

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V5D|1|CA|G|683
4V5D|1|CA|A|684
4V5D|1|CA|G|685
4V5D|1|CA|U|686
4V5D|1|CA|A|687
4V5D|1|CA|G|688
*
4V5D|1|CA|C|699
4V5D|1|CA|G|700
4V5D|1|CA|C|701
4V5D|1|CA|A|702
4V5D|1|CA|G|703
4V5D|1|CA|A|704
4V5D|1|CA|U|705
4V5D|1|CA|A|706
4V5D|1|CA|C|707

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA