IL_4V5D_200

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5D_200 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.07

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5D|1|CA|G|887
4V5D|1|CA|G|888
4V5D|1|CA|A|889
4V5D|1|CA|G|890
4V5D|1|CA|U|891
4V5D|1|CA|A|892
4V5D|1|CA|C|893
4V5D|1|CA|G|894
*
4V5D|1|CA|U|905
4V5D|1|CA|G|906
4V5D|1|CA|A|907
4V5D|1|CA|A|908
4V5D|1|CA|A|909
4V5D|1|CA|C|910

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12